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Archive for the ‘journal’ Category

Citation: Arnoult, L., Su, K. F., Manoel, D., Minervino, C., Magriña, J., Gompel, N., & Prud’homme, B. (2013). Emergence and Diversification of Fly Pigmentation Through Evolution of a Gene Regulatory Module. Science, 339 (6126): 1423-1426.


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Kathy Su obtained her Honours and Masters degrees at NUS has successfully completed her Ph.D. in France and is now back in Singapore to pursue her post-doctoral research at the Evolutionary Biology Lab.

Her doctoral research on the evolution of wing spot patterns in Drosophilid flies was recently published in the journal Science.

The study illustrated how the appearance of darkened wing spots within a group of closely related flies was orchestrated by the assembly of a gene regulatory network involving several pigmentation genes under the regulation of at least one shared transcription factor.

This study has broad implications and provides insights into the emergence of novel morphological traits and their subsequent diversification. Her study was also featured recently in the French press, Le Monde.

Congratulations Kathy on your recent publication!

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Citation: Stevens, M., P. R. Cheo & P. A. Todd, 2013. Colour change and camouflage in the horned ghost crab Ocypode ceratophthalmus. Biological Journal of the Linnean Society. doi: 10.1111/bij.12039


A paper published in the Biological Journal of the Linnean Society about ghost crab camouflage arose from a collaboration between Martin Stevens, Peter Todd and his hons student Cheo Pei Rong. BBC Nature News picked up the story on 5th April 2013:

BBC Nature - Horned ghost crabs change camouflage from day to night

This was picked up by WildSingapore when it first came out .and circulated in the local naturalists community. To find out more about this crab on our shores, Wild Singapore which has a page on Ocypode ceratophthalmus here.

Abstract – Species that change colour present an ideal opportunity to study the control and tuning of camouflage with regards to the background. However, most research on colour-pattern change and camouflage has been undertaken with species that rapidly alter appearance (in seconds), despite the fact that most species change appearance over longer time periods (e.g. minutes, hours, or days).

We investigated whether individuals of the horned ghost crab (Ocypode ceratophthalmus) from Singapore can change colour, when this occurs, and how it influences camouflage.

Individuals showed a clear daily rhythm of colour change, becoming lighter during the day and darker at night, and this significantly improved their camouflage to the sand substrate upon which they live. Individuals did not change colour when put into dark conditions, but they did become brighter when placed on a white versus a black substrate.

Our findings show that ghost crabs have a circadian rhythm of colour change mediating camouflage, which is fine-tuned by adaptation to the background brightness. These types of colour change can enable individuals to achieve effective camouflage under a range of environmental conditions, substrates, and time periods, and may be widespread in other species.

Martin Stevens, Peter Todd and his student Cheo Pei Rong

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Citation: Lim MLM & D. Li, 2013. UV-Green iridescence predicts male quality during jumping spider contests. PLoS ONE, 8(4): e59774. doi:10.1371/journal.pone.0059774.


Congratulations to Matthew Lim and Li Daiqin for their recently published PLoS One paper, “UV-Green Iridescence Predicts Male Quality during Jumping Spider Contests” – see PLoS One

PLOS ONE: UV-Green Iridescence Predicts Male Quality during Jumping Spider Contests

“This paper primarily investigates the correlations of a salticid’s structural colours (i.e., UV-green iridescence) with individual quality (i.e. physical endurance during male-male competition), providing insights into the role of ‘pure’ structural colours during animal contests.”

Abstract – “Animal colour signals used in intraspecies communications can generally be attributed to a composite effect of structural and pigmentary colours. Notably, the functional role of iridescent coloration that is ‘purely’ structural (i.e., absence of pigments) is poorly understood.

Recent studies reveal that iridescent colorations can reliably indicate individual quality, but evidence of iridescence as a pure structural coloration indicative of male quality during contests and relating to an individual’s resource-holding potential (RHP) is lacking.

In age- and size-controlled pairwise male-male contests that escalate from visual displays of aggression to more costly physical fights, we demonstrate that the ultraviolet-green iridescence of Cosmophasis umbratica predicts individual persistence and relates to RHP.

Contest initiating males exhibited significantly narrower carapace band separation (i.e., relative spectral positions of UV and green hues) than non-initiators. Asymmetries in carapace and abdomen brightness influenced overall contest duration and escalation.

As losers retreated upon having reached their own persistence limits in contests that escalated to physical fights, losers with narrower carapace band separation were significantly more persistence.

We propose that the carapace UV-green iridescence of C. umbratica predicts individual persistence and is indicative of a male’s RHP.

As the observed UV-green hues of C. umbratica are ‘pure’ optical products of a multilayer reflector system, we suggest that intrasexual variations in the optical properties of the scales’ chitin-air-chitin microstructures are responsible for the observed differences in carapace band separations.

matthew-spider (Cosmophasis umbratica)
Photo of male Cosmophasis umbratica by Matthew Lim

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Nanthinee Jevanandam who recently graduated from her PhD studies, was pleased to announce her paper in Biology Letters on fig wasps and climate warming.

Just as pleasing is news of her employment – Nanthinee is now working as an ecologist in the environment consultancy firm AECOM.

Congratulations Nanthinee, live long and prosper!

Nanthinee
Nanthinee at Bali during an ATBC conference.

Jevanandam N, A.G.R. Goh & R. T. Corlett, 2013 Climate warming and the potential extinction of fig wasps, the obligate pollinators of figs. Biology Letters, 9: 20130041. http://dx.doi.org/10.1098/rsbl.2013.0041

Nanthinee - figs

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Huang Danwei is a DBS-supported graduate student (NUS-Overseas Graduate Scholar) at the Scripps Institution of Oceanography who is will defend his dissertation in August this year.

His work focuses mainly on the reconstruction and application of the coral evolutionary tree – reconstruction of the “Big-mess-idae” group and using trees to examine extinction risk and conservation status.

Huang Danwei

Danwei suggested this figure for a good summary of some of what the work has accomplished thus far:

This is from his paper published in PLoS ONE on 30 Mar 2012: Huang, D. 2012. D. PLoS ONE, 7(3): e34459. doi:10.1371/journal.pone.0034459

PLoS ONE_ Threatened Reef Corals of the World
It’s open-acess, hop over to read

Abstract

“A substantial proportion of the world’s living species, including one-third of the reef-building corals, are threatened with extinction and in pressing need of conservation action. In order to reduce biodiversity loss, it is important to consider species’ contribution to evolutionary diversity along with their risk of extinction for the purpose of setting conservation priorities.

Here I reconstruct the most comprehensive tree of life for the order Scleractinia (1,293 species) that includes all 837 living reef species, and employ a composite measure of phylogenetic distinctiveness and extinction risk to identify the most endangered lineages that would not be given top priority on the basis of risk alone. The preservation of these lineages, not just the threatened species, is vital for safeguarding evolutionary diversity.

Tests for phylogeny-associated patterns show that corals facing elevated extinction risk are not clustered on the tree, but species that are susceptible, resistant or resilient to impacts such as bleaching and disease tend to be close relatives. Intensification of these threats or extirpation of the endangered lineages could therefore result in disproportionate pruning of the coral tree of life.”

The work hasn’t gone unnoticed – on 25 Apr 2012, this paper was identified by Nicholas Graham of James Cook University as a “must read” in the Faculty of 1000 (F1000) website. F1000 “identifies and evaluates the most important articles in biology and medical research publications. Articles are selected by a peer-nominated global ‘Faculty’ of the world’s leading scientists and clinicians [more than 10,000 experts worldwide] who then rate them and explain their importance.” ‘Approximately 2% of all published articles in the biological and medical sciences are listed each month.’

Threatened reef corals of the world. - F1000

“The author points out that linking evolutionary and extinction risk data may enable coral reef regions to be categorized for conservation based on species compositions that make the greatest contribution to evolutionary history. This may indeed be the case, but would ultimately need to be layered with other important ecological and social information that also needs to be considered in prioritizing conservation objectives.”

See: Graham N: “Danwei Huang combined phylogenetic distinctiveness data with International Union for Conservation of Nature (IUCN) extinction…” of: [Huang D. Threatened reef corals of the world. PLoS One. 2012; 7; doi: 10.1371/journal.pone.0034459]. Faculty of 1000, 25 Apr 2012. F1000.com/14267346#eval15779550

Thanks to Rudolf Meier for the alert!

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When not lurking the corridors of the department, Nalini Puniamoorthy is a doctoral candidate at the Institute of Evolutionary Biology and Environmental Studies at University of Zurich.

She just send news that she has a spring in her step (pun intended) with a recent paper published in Evolution. You can see the early view here: Puniamoorthy, N., Schäfer, M. A. & Blanckenhorn, W. U., 2012. Sexual selection accounts for the geographic reversal of sexual size dimorphism in the dung fly, Sepsis punctum (Diptera: Sepsidae). Evolution. doi: 10.1111/j.1558-5646.2012.01599.x

She sent her best wishes to all at home here in Singapore with the press release she coughed up to explain her research findings, and which you can read in the pdf here

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James Guest, until recently, was a Lee Kuan Yew post-doctoral research fellow with the Marine Lab. All this while he has been working to understand the extent of spatial and temporal variation in thermal tolerance of corals, as this information would be crucial to the design of marine protected areas against climate change.

He shares the good news that PLoS ONE has published a paper today (date in USA is 09 Mar 2012) which he submitted about adaptation by corals in mass coral bleaching sites in Singapore and Malaysia.

As he says, “the research provides solid field evidence that certain coral taxa in Singapore and Malaysia have the capacity to adapt/acclimatise to thermal stress.”

The image from the paper below shows the different bleaching responses from their three study locations in Sumatra, Malaysia and Singapore. The photos indicate a reversed response of Acropora in Singapore and Malaysia.

James told me enthusiastically he hopes these stunning images “provides a bit of hopeful news among the general climate change doom and gloom!”

Contrasting coral bleaching patterns during 2010. Bleached Acropora colonies from (A) Pulau Weh, north Sumatra, Indonesia where patterns in bleaching susceptibility were normal. Reversals in bleaching susceptibility gradients in (B) Singapore and (C) Tioman Island, Malaysia, where healthy Acropora colonies were found adjacent to bleached encrusting, foliose and massive colonies: corals which are usually relatively resistant to bleaching.

Download the paper here; citation: Guest JR , Baird AH , Maynard JA , Muttaqin E , Edwards AJ , et al. (2012) Contrasting Patterns of Coral Bleaching Susceptibility in 2010 Suggest an Adaptive Response to Thermal Stress. PLoS ONE 7(3): e33353. doi:10.1371/journal.pone.0033353

PLoS ONE: Contrasting Patterns of Coral Bleaching Susceptibility in 2010 Suggest an Adaptive Response to Thermal Stress

Abstract

Background: Coral bleaching events vary in severity, however, to date, the hierarchy of susceptibility to bleaching among coral taxa has been consistent over a broad geographic range and among bleaching episodes. Here we examine the extent of spatial and temporal variation in thermal tolerance among scleractinian coral taxa and between locations during the 2010 thermally induced, large-scale bleaching event in South East Asia.

Methods/Principal Findings: Surveys to estimate the bleaching and mortality indices of coral genera were carried out at three locations with contrasting thermal and bleaching histories. Despite the magnitude of thermal stress being similar among locations in 2010, there was a remarkable contrast in the patterns of bleaching susceptibility. Comparisons of bleaching susceptibility within coral taxa and among locations revealed no significant differences between locations with similar thermal histories, but significant differences between locations with contrasting thermal histories (Friedman = 34.97; p 0.001).

Bleaching was much less severe at locations that bleached during 1998, that had greater historical temperature variability and lower rates of warming. Remarkably, Acropora and Pocillopora, taxa that are typically highly susceptible, although among the most susceptible in Pulau Weh (Sumatra, Indonesia) where respectively, 94% and 87% of colonies died, were among the least susceptible in Singapore, where only 5% and 12% of colonies died.

Conclusions/Significance: The pattern of susceptibility among coral genera documented here is unprecedented. A parsimonious explanation for these results is that coral populations that bleached during the last major warming event in 1998 have adapted and/or acclimatised to thermal stress. These data also lend support to the hypothesis that corals in regions subject to more variable temperature regimes are more resistant to thermal stress than those in less variable environments.

James GUEST field photo

James is now a research fellow at University of New South Wales (UNSW Sydney) working with Prof. Peter Steinberg’s group in the Centre for Marine Bio-innovation (CMB), who is co-director of the marine ecology group within NTU’s Advanced Environmental Biotechnology Centre (AEBC), where James is now a visiting research fellow. James helps run a multi-disciplinary group of scientists, including geneticists, microbiologists, chemists and ecologists to tackle problems facing tropical marine ecosystems in Singapore and the region. You can email him at jrguest@gmail.com

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Spiders Coat Webs With Toxic Chemicals for Self-Defense | Wired Science | Wired.com

The paper is: Shichang Zhang, Teck Hui Koh, Wee Khee Seah, Yee Hing Lai, Mark A. Elgar, and Daiqin Li. A novel property of spider silk: chemical defence against ants. Proc R Soc B 2011 : rspb.2011.2193v1-rspb20112193 (Published online before print November 23, 2011, doi: 10.1098/rspb.2011.2193).

A novel property of spider silk: chemical defence against ants

Thanks to bio-alumni Lee Kee Seng’s highlight on facebook.

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Our former postdoc colleague Jennifer Sheridan, who just recently moved on to a new post at the University of Alabama and resident herpetologist David Bickford have recently published an article in Nature Climate Change entitled “Shrinking body size as an ecological response to climate change”.  

They compiled evidence of how warming temperatures may lead to various taxa becoming smaller.  The article is an interesting read and has been widely covered by the media including CNN, New York Times, Yahoo and hilariously, even The Onion.

David hopes that this perspective piece stimulates discussion and future scientific study in this area. Let’s hope that it does!

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Dan Friess (4)

Dan Friess & co. in Ted Webb’s Applied Plant Ecology lab have just authoured a humongous paper which Dan claims is readable for students. I have not decided if I should inflict this on the second year ecology undergrads so let me know what you think.

It’s must for all you mud-loving folk out there. And if you’re in Singapore, Dan is available for questions at one of the campus’ Spinellis, because you all know what a layabout he is!

Congrats Dan and all!

Friess et all, 2011 - Are all intertidal wetlands naturally created equal? Bottlenecks, thresholds and knowledge gaps to mangrove and saltmarsh.pdf (page 1 of 21)

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